{ "_id": "6a0f7126acfb0bcc41c5f6b7", "Package": "permChacko", "Title": "Chacko Test for Order-Restriction with Permutation", "Version": "1.0.1.9000", "Date": "2024-09-18", "Authors@R": "c(\nperson(\ngiven = \"Waldir\", family = \"Leoncio\",\nemail = \"w.l.netto@medisin.uio.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6719-6162\")\n),\nperson(\ngiven = \"Graeme\", family = \"Ruxton\", role = \"aut\"\n),\nperson(\ngiven = \"Morten Wang\", family = \"Fagerland\", role = \"aut\",\nemail = \"morten.fagerland@medisin.uio.no\"\n)\n)", "Description": "Implements an extension of the Chacko chi-square test for\nordered vectors (Chacko, 1966,\n). Our extension brings\nthe Chacko test to the computer age by implementing a\npermutation test to offer a numeric estimate of the p-value,\nwhich is particularly useful when the analytic solution is not\navailable.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "URL": "https://ocbe-uio.github.io/permChacko/", "BugReports": "https://github.com/ocbe-uio/permChacko/issues", "VignetteBuilder": "knitr", "Repository": "https://ocbe-uio.r-universe.dev", "Date/Publication": "2024-09-18 08:09:33 UTC", "RemoteUrl": "https://github.com/ocbe-uio/permChacko", "RemoteRef": "HEAD", "RemoteSha": "ea814285483cbd40836cda4e17eb40b44a957597", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-21 07:20:15 UTC", "User": "root" }, "Author": "Waldir Leoncio [aut, cre] (ORCID:\n),\nGraeme Ruxton [aut],\nMorten Wang Fagerland [aut]", "Maintainer": "Waldir Leoncio ", "MD5sum": "f2f1891e2c60f7776ed75b7f9c210fe5", "_user": "ocbe-uio", "_type": "src", "_file": "permChacko_1.0.1.9000.tar.gz", "_fileid": "c23d7da1361516465aaac4c65af453c1b0675542ddab511840f81e6d741b6b9b", "_filesize": 138182, "_sha256": "c23d7da1361516465aaac4c65af453c1b0675542ddab511840f81e6d741b6b9b", "_created": "2026-05-21T07:20:15.000Z", "_published": "2026-05-21T20:55:02.391Z", "_distro": "noble", "_jobs": [ { "job": 77266876965, "time": 116, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7129595589" }, { "job": 77266877295, "time": 129, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7129600174" }, { "job": 77266876860, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7129593243" }, { "job": 77266877147, "time": 100, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7129590296" }, { "job": 77266876701, "time": 152, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7129558412" }, { "job": 77266876388, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7146991004" }, { "job": 77266876699, "time": 183, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7129622129" }, { "job": 77266877057, "time": 74, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7129581861" }, { "job": 77266876714, "time": 132, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7129603925" } ], "_buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/ocbe-uio/permChacko", "_commit": { "id": "ea814285483cbd40836cda4e17eb40b44a957597", "author": "Waldir Leoncio ", "committer": "Waldir Leoncio ", "message": "Merge branch 'fix-smells' into develop\n\n* fix-smells:\n Updated NEWS.md\n Using implicit return behavior\n", "time": 1726646973 }, "_maintainer": { "name": "Waldir Leoncio", "email": "w.l.netto@medisin.uio.no", "login": "wleoncio", "description": "Research Software Engineer @ocbe-uio", "uuid": 8234768, "orcid": "0000-0002-6719-6162" }, "_registered": true, "_dependencies": [ { "package": "methods", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "ocbe-uio", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "wleoncio", "count": 244, "uuid": 8234768 } ], "_userbio": { "uuid": 58079878, "type": "organization", "name": "Oslo Centre for Biostatistics and Epidemiology", "description": "This is where we host most of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital." }, "_downloads": { "count": 165, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/permChacko" }, "_devurl": "https://github.com/ocbe-uio/permchacko", "_pkgdown": "https://ocbe-uio.github.io/permChacko/", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/permChacko.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ocbe-uio/permchacko", "_realowner": "ocbe-uio", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2023-05-23" }, { "version": "0.2.0", "date": "2023-11-07" }, { "version": "1.0.0", "date": "2024-04-17" }, { "version": "1.0.1", "date": "2024-09-18" } ], "_exports": [ "chacko63_tab1", "chacko66_sec3", "chacko66_sec5", "permChacko", "reduceVector", "ruxton221207" ], "_help": [ { "page": "dot-onAttach", "title": "Prints welcome message on package attachment", "topics": [ ".onAttach" ] }, { "page": "chacko63_tab1", "title": "Table I", "topics": [ "chacko63_tab1" ] }, { "page": "chacko66_sec3", "title": "Chacko (1966), section 3", "topics": [ "chacko66_sec3" ] }, { "page": "chacko66_sec5", "title": "Chacko (1966), section 5", "topics": [ "chacko66_sec5" ] }, { "page": "permChacko", "title": "The Chacko test for order-restriction with permutation test", "topics": [ "permChacko" ] }, { "page": "reduceVector", "title": "Reduce a vector using the ordering process", "topics": [ "reduceVector" ] }, { "page": "ruxton221207", "title": "Example by Graeme Ruxton", "topics": [ "ruxton221207" ] } ], "_readme": "https://github.com/ocbe-uio/permChacko/raw/HEAD/README.md", "_rundeps": [], "_vignettes": [ { "source": "improving_chacko.Rmd", "filename": "improving_chacko.html", "title": "Improving the Chacko (1966) test", "engine": "knitr::rmarkdown", "headings": [ "Chacko's ordering process", "Calculating $p$-values", "Permutation test" ], "created": "2023-09-01 09:28:51", "modified": "2023-09-01 09:28:51", "commits": 1 } ], "_score": 3.6989700043360187, "_indexed": true, "_nocasepkg": "permchacko", "_universes": [ "ocbe-uio", "wleoncio" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1.9000", "date": "2026-05-21T07:22:14.000Z", "distro": "noble", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "dd8912cced3acb60c96c398ca9866793278a4d851ee7db7ff9a99d0cb0525d8a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.6.0", "os": "linux", "version": "1.0.1.9000", "date": "2026-05-21T07:22:28.000Z", "distro": "noble", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "b052ec81152356ab5d8821a2db59bc74c6189ae17be82567ed2a4c97b8a8d358", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.5.3", "os": "mac", "version": "1.0.1.9000", "date": "2026-05-21T07:22:07.000Z", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "29440bf8e00bb654baa915bc92a6c38cf7637d4c3748b59db247199781c1dee2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.6.0", "os": "mac", "version": "1.0.1.9000", "date": "2026-05-21T07:22:00.000Z", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "7fb07d692e5ccdb64c92e93fe867855c066560f433e024be17eabafb78b867c0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1.9000", "date": "2026-05-21T20:54:43.000Z", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "d7d441c035dbb96f034490e2c9e12aad4357bd623c7d34f4ce54005edbea5067", "status": "success", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.7.0", "os": "win", "version": "1.0.1.9000", "date": "2026-05-21T07:23:28.000Z", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "2f680bfb9853a1851ea9f2cc26c430ac0df588eadc879a22789b66df281fb6af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.5.3", "os": "win", "version": "1.0.1.9000", "date": "2026-05-21T07:21:31.000Z", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "bc98a9b4d098409461f6fe4d47d178b2cac146b976624cff10a25a412b02b92e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" }, { "r": "4.6.0", "os": "win", "version": "1.0.1.9000", "date": "2026-05-21T07:22:33.000Z", "commit": "ea814285483cbd40836cda4e17eb40b44a957597", "fileid": "6a363557cd64b1a29ed1ccb8903f3cf19d38939bb7d3a3b605110604e91e209e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ocbe-uio/actions/runs/26211481037" } ] }