Package: EnrichIntersect 1.0

Zhi Zhao

EnrichIntersect: Enrichment Analysis and Intersecting Sankey Diagram

A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., 2022 <doi:10.1016/j.isci.2022.104767>) or similar methods.

Authors:Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb]

# Install 'EnrichIntersect' in R:

install.packages('EnrichIntersect', repos = c('https://ocbe-uio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ocbe-uio/enrichintersect/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

cancers_drug_groups - Data set 'cancers_drug_groups'
cancers_genes_drugs - Data set 'cancers_genes_drugs'

On CRAN:

cpp

4.70 score 5 stars 260 downloads 2 exports 67 dependencies

Last updated from:089f845703. Checks:11 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	NOTE	159
linux-devel-x86_64	NOTE	183
source / vignettes	OK	226
linux-release-arm64	NOTE	158
linux-release-x86_64	NOTE	192
macos-release-arm64	NOTE	132
macos-release-x86_64	NOTE	391
macos-oldrel-arm64	NOTE	130
macos-oldrel-x86_64	NOTE	240
windows-devel	NOTE	133
windows-release	NOTE	174
windows-oldrel	NOTE	122
wasm-release	OK	146

Exports:enrichment intersectSankey

Dependencies:AsioHeaders base64enc bslib cachem callr chromote cli cpp11 curl data.tree digest dplyr evaluate farver fastmap fontawesome fs generics ggplot2 glue gtable highr htmltools htmlwidgets igraph isoband jquerylib jsonlite knitr labeling later lattice lifecycle magrittr Matrix memoise mime networkD3 otel pillar pkgconfig processx promises ps R6 rappdirs RColorBrewer Rcpp RcppArmadillo rlang rmarkdown S7 sass scales stringi tibble tidyselect tinytex utf8 vctrs viridisLite webshot2 websocket withr xfun yaml zip

EnrichIntersect Tutorial

Examples | Plot enrichment map | Plot Sankey diagram for intersecting set through an array | Citation

Rendered fromEnrichIntersect.Rmdusingknitr::rmarkdown

Last update: 2026-05-29
Started: 2022-09-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Data set 'cancers_drug_groups'	cancers_drug_groups
Data set 'cancers_genes_drugs'	cancers_genes_drugs
Plot enrichment map	enrichment
Plot Sankey diagram for intersecting sets	intersectSankey