Package: EnrichIntersect 0.7

Zhi Zhao

EnrichIntersect: Enrichment Analysis and Intersecting Sankey Diagram

A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., 2022 <doi:10.1016/j.isci.2022.104767>) or similar methods.

Authors:Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb]

EnrichIntersect_0.7.tar.gz
EnrichIntersect_0.7.zip(r-4.5)EnrichIntersect_0.7.zip(r-4.4)EnrichIntersect_0.7.zip(r-4.3)
EnrichIntersect_0.7.tgz(r-4.5-any)EnrichIntersect_0.7.tgz(r-4.4-any)EnrichIntersect_0.7.tgz(r-4.3-any)
EnrichIntersect_0.7.tar.gz(r-4.5-noble)EnrichIntersect_0.7.tar.gz(r-4.4-noble)
EnrichIntersect_0.7.tgz(r-4.4-emscripten)EnrichIntersect_0.7.tgz(r-4.3-emscripten)
EnrichIntersect.pdf |EnrichIntersect.html✨
EnrichIntersect/json (API)
NEWS

# Install 'EnrichIntersect' in R:
install.packages('EnrichIntersect', repos = c('https://ocbe-uio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ocbe-uio/enrichintersect/issues

Datasets:

On CRAN:

Conda:

4.30 score 4 stars 261 downloads 2 exports 67 dependencies

Last updated 1 years agofrom:988c05e0ba. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 20 2025
R-4.5-winNOTEMar 20 2025
R-4.5-macNOTEMar 20 2025
R-4.5-linuxNOTEMar 20 2025
R-4.4-winNOTEMar 20 2025
R-4.4-macNOTEMar 20 2025
R-4.4-linuxNOTEMar 20 2025
R-4.3-winNOTEMar 20 2025
R-4.3-macNOTEMar 20 2025

Exports:enrichmentintersectSankey

Dependencies:AsioHeadersbase64encbslibcachemcallrchromoteclicolorspacecpp11curldigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnetworkD3nlmepillarpkgconfigprocessxpromisespsR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalestibbletidyselecttinytexutf8vctrsviridisLitewebshot2websocketwithrxfunyaml

EnrichIntersect Tutorial

Zhi Zhao

Rendered fromEnrichIntersect.Rmdusingknitr::rmarkdownon Mar 20 2025.

Last update: 2024-03-14
Started: 2022-09-23