Package: EnrichIntersect 0.7

Zhi Zhao

EnrichIntersect: Enrichment Analysis and Intersecting Sankey Diagram

A flexible tool for enrichment analysis based on user-defined sets. It allows users to perform over-representation analysis of the custom sets among any specified ranked feature list, hence making enrichment analysis applicable to various types of data from different scientific fields. 'EnrichIntersect' also enables an interactive means to visualize identified associations based on, for example, the mix-lasso model (Zhao et al., 2022 <doi:10.1016/j.isci.2022.104767>) or similar methods.

Authors:Zhi Zhao [aut, cre], Manuela Zucknick [aut], Tero Aittokallio [ctb]

EnrichIntersect_0.7.tar.gz
EnrichIntersect_0.7.zip(r-4.5)EnrichIntersect_0.7.zip(r-4.4)EnrichIntersect_0.7.zip(r-4.3)
EnrichIntersect_0.7.tgz(r-4.4-any)EnrichIntersect_0.7.tgz(r-4.3-any)
EnrichIntersect_0.7.tar.gz(r-4.5-noble)EnrichIntersect_0.7.tar.gz(r-4.4-noble)
EnrichIntersect_0.7.tgz(r-4.4-emscripten)EnrichIntersect_0.7.tgz(r-4.3-emscripten)
EnrichIntersect.pdf |EnrichIntersect.html✨
EnrichIntersect/json (API)
NEWS

# Install 'EnrichIntersect' in R:

install.packages('EnrichIntersect', repos = c('https://ocbe-uio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ocbe-uio/enrichintersect/issues

Datasets:

cancers_drug_groups - Data set 'cancers_drug_groups'
cancers_genes_drugs - Data set 'cancers_genes_drugs'

On CRAN:

2 exports 4 stars 4.60 score 67 dependencies 330 downloads

Last updated 7 months agofrom:988c05e0ba. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 21 2024
R-4.5-win	NOTE	Sep 21 2024
R-4.5-linux	NOTE	Sep 21 2024
R-4.4-win	NOTE	Sep 21 2024
R-4.4-mac	NOTE	Sep 21 2024
R-4.3-win	NOTE	Sep 21 2024
R-4.3-mac	NOTE	Sep 21 2024

Exports:enrichment intersectSankey

Dependencies:AsioHeaders base64enc bslib cachem callr chromote cli colorspace cpp11 curl digest dplyr evaluate fansi farver fastmap fontawesome fs generics ggplot2 glue gtable highr htmltools htmlwidgets igraph isoband jquerylib jsonlite knitr labeling later lattice lifecycle magrittr MASS Matrix memoise mgcv mime munsell networkD3 nlme pillar pkgconfig processx promises ps R6 rappdirs RColorBrewer Rcpp rlang rmarkdown sass scales tibble tidyselect tinytex utf8 vctrs viridisLite webshot2 websocket withr xfun yaml

EnrichIntersect Tutorial

Zhi Zhao

Rendered fromEnrichIntersect.Rmdusingknitr::rmarkdownon Sep 21 2024.

Last update: 2024-03-14
Started: 2022-09-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Data set 'cancers_drug_groups'	cancers_drug_groups
Data set 'cancers_genes_drugs'	cancers_genes_drugs
Plot enrichment map	enrichment
Plot Sankey diagram for intersecting sets	intersectSankey