Introduction21 days ago
Installation | A simulation study | References
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EnrichIntersect Tutorial27 days ago
Examples | Plot enrichment map | Plot Sankey diagram for intersecting set through an array | Citation
Penalized Semiparametric Bayesian Cox Models9 months ago
Installation | Examples | Run a Bayesian Lasso Cox with mandatory variables | Plot posterior estimates of regression coefficients | Plot time-dependent Brier scores | Predict survival probabilities and cumulative hazards | References
Bayesian Cox models with graph-structured variable selection priors1 years ago
Installation | Examples | Simulate data | Run a Bayesian Cox model | Plot time-dependent Brier scores | Predict survival probabilities and cumulative hazards | Run a 'Pooled' Bayesian Cox model with graphical learning | Run a Bayesian Cox model with subgroups using fixed graph | Run a Bayesian Cox model with subgroups using graphical learning | References
BayesSUR with random effects2 years ago
Simulate data | Run BayesSUR model with random effects | Referrence
Introduction2 years ago
Analysis of complete rankings | Jumping over the scale parameter | Other distance metric | Analysis of preference data | Convergence diagnostics | Posterior distributions | Clustering | Deciding on the number of mixture components | References
Sequential Monte Carlo for the Bayesian Mallows model2 years ago
New users with complete rankings | New users with partial or complete rankings | Users updating their rankings | References
MCMC with Parallel Chains2 years ago
Why Parallel Chains? | Parallel Chains with Complete Rankings | Parallel Chains with Pairwise Preferences | Trace Plots | Posterior Quantities | References
Improving the Chacko (1966) test3 years ago
Chacko's ordering process | Calculating $p$-values | Permutation test
Sampling and ML estimation3 years ago
Using TruncExpFam | Sampling from a truncated distribution | Different ways to do the same thing | Actually sampling from a truncated distribution | Recovering the original parameters
cellmigRation5 years ago
Introduction | Summary | Notes and Acknowledgmenets | More resources | Reproducibility | Installation | cellmigRation Pipeline | Required libraries | Module 1 | Importing TIFF files | Optimizing Tracking Params | Tracking Cell Movements | Basic migration stats | Basic Visualizations | Aggregate Cell Tracks | Module 2 | Import and Pre-process Cell Tracks | Plotting tracks (2D and 3D) | 3D Plots | Deep Trajectory Analysis | Final Results | Principal Component Analysis (PCA) and Cell Clustering | Session & Environment
BayesSUR: An R package for high-dimensional multivariate Bayesian variable and covariance selection in linear regression7 years ago
Introduction | Models specification | The R package BayesSUR | Quick start with a simple example | Two extended examples based on real data | Conclusion | The elpd
