Package: psbcSpeedUp 2.1.1

Zhi Zhao

psbcSpeedUp: Penalized Semiparametric Bayesian Cox Models

Algorithms to speed up the Bayesian Lasso Cox model (Lee et al., Int J Biostat, 2011 <doi:10.2202/1557-4679.1301>) and the Bayesian Lasso Cox with mandatory variables (Zucknick et al. Biometrical J, 2015 <doi:10.1002/bimj.201400160>).

Authors:Zhi Zhao [aut, cre], Manuela Zucknick [aut], Maral Saadati [aut], Axel Benner [aut]

psbcSpeedUp_2.1.1.tar.gz
psbcSpeedUp_2.1.1.zip(r-4.7)psbcSpeedUp_2.1.1.zip(r-4.6)psbcSpeedUp_2.1.1.zip(r-4.5)
psbcSpeedUp_2.1.1.tgz(r-4.6-x86_64)psbcSpeedUp_2.1.1.tgz(r-4.6-arm64)psbcSpeedUp_2.1.1.tgz(r-4.5-x86_64)psbcSpeedUp_2.1.1.tgz(r-4.5-arm64)
psbcSpeedUp_2.1.1.tar.gz(r-4.7-arm64)psbcSpeedUp_2.1.1.tar.gz(r-4.7-x86_64)psbcSpeedUp_2.1.1.tar.gz(r-4.6-arm64)psbcSpeedUp_2.1.1.tar.gz(r-4.6-x86_64)
psbcSpeedUp_2.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
psbcSpeedUp/json (API)
NEWS

# Install 'psbcSpeedUp' in R:
install.packages('psbcSpeedUp', repos = c('https://ocbe-uio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ocbe-uio/psbcspeedup/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

Conda:

bayesian-cox-modelsbayesian-lassoomics-datasurvival-analysisopenblascppopenmp

4.48 score 3 stars 267 downloads 2 exports 115 dependencies

Last updated from:502743f25d. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK195
linux-devel-x86_64OK200
source / vignettesOK366
linux-release-arm64OK193
linux-release-x86_64OK211
macos-release-arm64OK150
macos-release-x86_64OK233
macos-oldrel-arm64OK123
macos-oldrel-x86_64OK263
windows-develOK184
windows-releaseOK159
windows-oldrelOK248
wasm-releaseOK145

Exports:plotBrierpsbcSpeedUp

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercmprskcodetoolscolorspacecpp11crayondata.tablediagramdigestdoParalleldplyrevaluatefarverfastmapfontawesomeforcatsforeachforeignFormulafsfuturefuture.applygenericsGGallyggplot2ggstatsglmnetglobalsgluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelistenvmagrittrMASSMatrixMatrixModelsmemoisemetsmimemultcompmvtnormnlmennetnumDerivparallellypatchworkpillarpkgconfigplotrixpolsplineprettyunitsprodlimprogressprogressrPublishpurrrquantregR6rangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenriskRegressionrlangrmarkdownrmsrpartrstudioapiS7sandwichsassscalesshapeSparseMSQUAREMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeregtinytexutf8vctrsviridisLitewithrxfunyamlzoo

Penalized Semiparametric Bayesian Cox Models

Rendered fromBayesCox.Rmdusingknitr::rmarkdownon May 15 2026.

Last update: 2025-09-30
Started: 2023-12-08