Package: psbcSpeedUp 2.0.7

Zhi Zhao

psbcSpeedUp: Penalized Semiparametric Bayesian Cox Models

Algorithms to speed up the Bayesian Lasso Cox model (Lee et al., Int J Biostat, 2011 <doi:10.2202/1557-4679.1301>) and the Bayesian Lasso Cox with mandatory variables (Zucknick et al. Biometrical J, 2015 <doi:10.1002/bimj.201400160>).

Authors:Zhi Zhao [aut, cre], Manuela Zucknick [aut], Maral Saadati [aut], Axel Benner [aut]

psbcSpeedUp_2.0.7.tar.gz
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psbcSpeedUp.pdf |psbcSpeedUp.html✨
psbcSpeedUp/json (API)
NEWS

# Install 'psbcSpeedUp' in R:
install.packages('psbcSpeedUp', repos = c('https://ocbe-uio.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ocbe-uio/psbcspeedup/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

bayesian-cox-modelsomics-datasurvival-analysis

2 exports 3 stars 5.02 score 119 dependencies 229 downloads

Last updated 3 months agofrom:ae3ab77acb. Checks:OK: 1 NOTE: 8. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 29 2024
R-4.5-win-x86_64NOTESep 29 2024
R-4.5-linux-x86_64NOTESep 29 2024
R-4.4-win-x86_64NOTESep 29 2024
R-4.4-mac-x86_64NOTESep 29 2024
R-4.4-mac-aarch64NOTESep 29 2024
R-4.3-win-x86_64NOTEJul 31 2024
R-4.3-mac-aarch64NOTEJul 31 2024
R-4.3-mac-x86_64NOTEJul 31 2024

Exports:plotBrierpsbcSpeedUp

Dependencies:backportsbase64encbslibcachemcheckmatecliclustercmprskcodetoolscolorspacecpp11crayondata.tablediagramdigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsfuturefuture.applygenericsGGallyggplot2ggstatsglobalsgluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelavalifecyclelistenvmagrittrMASSMatrixMatrixModelsmemoisemetsmgcvmimemultcompmunsellmvtnormnlmennetnumDerivparallellypatchworkpillarpkgconfigplotrixplyrpolsplineprettyunitsprodlimprogressprogressrPublishpurrrquantregR6rangerrappdirsRColorBrewerRcppRcppArmadilloRcppEigenriskRegressionrlangrmarkdownrmsrpartrstudioapisandwichsassscalesshapeSparseMSQUAREMstringistringrsurvivalTH.datatibbletidyrtidyselecttimeregtinytexutf8vctrsviridisviridisLitewithrxfunxml2yamlzoo

Penalized Semiparametric Bayesian Cox Models

Rendered fromBayesCox.Rmdusingknitr::rmarkdownon Sep 29 2024.

Last update: 2024-03-21
Started: 2023-12-08